Matching, dimensions and designs
Source:vignettes/matching-and-designs.Rmd
matching-and-designs.RmdChoosing stimuli is a constrained selection problem. One lexical
property is manipulated, several others must not vary with it, and the
words that satisfy every constraint at once are a small and awkward
subset of the language. This vignette covers how lexsync
states those constraints and how it resolves them: the dimensions it
computes, the filters that narrow a lexicon to a candidate pool, the
four matching methods and the situations each one suits, the tolerance
windows that bound an acceptable match, the continuous alternative to a
matched dichotomy, and the report that tells you what control the
selection actually achieved.
Everything below runs on the English example lexicon bundled with the package, a 3000-word slice that needs no download.
library(lexsync)
schema <- yaml::read_yaml(
system.file("extdata", "schema.yaml", package = "lexsync")
)
lex <- load_lexicon(
system.file("extdata", "en_example.csv", package = "lexsync"),
schema, language = "english"
)
head(
lex[, c("word", "frequency", "length", "n_syllables", "n_density", "old20")],
4
) word frequency length n_syllables n_density old20
1 aaa 3.77 3 1 19 1.0
2 aac 3.00 3 1 22 1.0
3 aap 3.47 3 1 21 1.0
4 aaron 4.23 5 2 3 1.8
The lexical dimensions
A dimension is any numeric column the matcher can equate.
lexsync distinguishes those read straight from the lexicon
file from those computed from the orthographic form at load time, and
the schema records the distinction along with each dimension’s unit.
Units matter when reading a report: a raw difference of 1 means one
letter on length but a factor of ten in corpus occurrence
on frequency, which is why the comparisons are
standardised.
dims <- schema$dimensions
knitr::kable(data.frame(
dimension = names(dims),
type = vapply(dims, function(d) d$type, character(1)),
unit = vapply(dims, function(d) d$unit, character(1)),
row.names = NULL
), caption = "The dimensions declared in schema.yaml")| dimension | type | unit |
|---|---|---|
| length | derived | characters |
| frequency | column | Zipf |
| n_density | derived | neighbours |
| old20 | derived | mean Levenshtein distance |
| n_syllables | derived | syllables (orthographic estimate) |
| bigram_freq | derived | mean bigram probability (type-based, non-positional) |
length is the character count of the orthographic form.
frequency is the Zipf value read from the lexicon’s
freq_zipf column, a log-scaled measure on which roughly 1
is a word occurring once per hundred million tokens and 7 a word
occurring ten thousand times per million. The value is the base-10
logarithm of the frequency per billion words (van Heuven et al., 2014).
It is preferred to raw counts because it is linear in the log space in
which frequency effects are approximately linear, and because it is
comparable across corpora of different sizes. n_density is
Coltheart’s N, the count of same-length words differing by one letter
substitution (Coltheart et al., 1977). old20 is the mean
Levenshtein distance to the twenty nearest words in the reference set,
which unlike Coltheart’s N is defined for long words, where substitution
neighbours run out (Yarkoni et al., 2008). A larger OLD20 means a more
isolated word, so it runs in the opposite direction to
n_density.
n_syllables also arrives at load time, counting maximal
runs of vowels, an orthographic estimate with no pronunciation model
behind it. Only bigram_freq is computed on request, by
add_bigram_frequency(): it is the mean corpus probability
of a word’s adjacent letter bigrams, standing proxy for phonotactic
probability.
count_syllables(c("cat", "table", "rhythm", "being", "chocolate"))[1] 1 2 1 1 4
The estimate is worth its caveat, and the errors run in both
directions. It handles rhythm because y is
treated as a vowel letter. It undercounts being, whose
ei is one run of vowel letters spanning two nuclei, and it
overcounts chocolate, whose silent final e
forms a run of its own. The measure is adequate for equating two
conditions on gross syllabic complexity and it is not a substitute for a
pronunciation dictionary.
Computing dimensions on a pool
The bundled lexicon arrives with n_density and
old20 already present, but neighbourhood measures depend on
the reference set they are computed against, so a lexicon derived
elsewhere may need them recomputed. add_neighbourhood()
does that. Both measures are quadratic in the size of the reference set,
which is why the pipeline computes them on the pool alone, and why the
reference should still be the whole lexicon: a word’s neighbours are its
neighbours in the language, not among the handful of words that survived
your filters.
sample_words <- lex[lex$word %in% c("cat", "dog", "house", "rhythm"), ]
add_neighbourhood(
sample_words, reference = lex$word
)[, c("word", "n_density", "old20")] word n_density old20
1287 house 0 2.55
add_bigram_frequency() works the same way, and
merge_norms() joins any word-keyed norm table, which is how
dimensions the corpus does not carry (concreteness, age of acquisition,
behavioural measures from a megastudy) become matchable. Once a column
is present, the matcher treats it like any other.
aoa <- data.frame(word = c("cat", "dog", "house"), aoa = c(3.1, 3.0, 3.4))
merged <- merge_norms(lex, aoa)
merged[merged$word %in% aoa$word, c("word", "frequency", "aoa")] word frequency aoa
1287 house 5.71 3.4
The join is case- and whitespace-insensitive on both sides, keeps the lexicon’s own row and column order, and refuses a norm column whose name already exists on the lexicon. A silent rename would be the worst available outcome: it leaves the dimension the design matches on under a name nothing looks for.
In a design you do not call this yourself. Name the tables in a
norms: block and the pipeline joins them before the pool is
built, so a norm column can be filtered on, matched on or spanned like
any other dimension.
norms:
- path: norms/en_concreteness.csv
on: word # optional join key, default 'word'
columns: [concreteness] # optional; default every column but the key
pool_filters:
concreteness: [2.0, 5.0]
match_on: [length, concreteness]lexsync ships no norm data: licences vary, and the citation is yours to honour. What it does do is record what you joined. Every table appears in the materials datasheet with its checksum and its per-column coverage, because a norm table can supply the very variable a design manipulates, and a selection over columns of unstated origin is not reproducible from the record that exists to make it so. Coverage is recorded for a related reason: a word the table does not cover gets a missing value, and the tolerance windows then drop it from the pool.
Pool filters
A pool filter narrows the lexicon before any matching happens. It states what counts as an eligible word at all, independently of condition, and it is the right place for constraints you would apply to every item in the study.
pool_filters <- list(length = c(3, 7), frequency = c(3.8, 7.0))
pool <- build_pool(lex, pool_filters)
c(lexicon = nrow(lex), pool = nrow(pool))lexicon pool
3000 782
A numeric pair is read as an inclusive range. Any other vector is
read as a set of permitted values, so
list(pos = c("noun", "verb")) would keep nouns and verbs if
the lexicon carried a pos column. A filter naming a column
the lexicon does not have is skipped silently, which keeps one schema
usable across corpora that differ in their optional columns, and which
is worth knowing about when a filter appears not to bite. Rows missing a
value on a filtered column are always dropped.
Filtering is a separate step from matching.
match_stimuli() reads a design’s conditions
and match_on fields but never its
pool_filters, so passing a raw lexicon where a pool was
intended silently widens the selection, with no error to warn you. The
pipeline calls build_pool() first and the examples here do
the same.
Supplied item pools
Narrowing a whole lexicon is the right way round when any word of the
language will do. It is the wrong way round when the candidate set is
itself a research decision: a list from a previous study, from a norming
session, or one restricted to a semantic category that no lexical filter
can express. Such a list used to have to masquerade as a lexicon, which
meant inventing a freq_zipf column for it, or else skip
matching entirely by going in as items.source: table.
items.source: pool takes the list as it is.
The list needs only a word column. Length and the
syllable estimate are derived from the form, and
items.lexicon supplies the rest, frequency above all, by
lookup. A word the lexicon does not have raises a hard error, because
the tolerance windows drop rows with missing values silently and the
pool would then be smaller than it appears to be.
One subtlety would quietly invalidate the controls if it went the
other way. n_density and old20 are properties
of a word in its language, not among the 131 words of a
supplied list, so they are computed against the lexicon’s words. A
supplied pool with no lexicon falls back to itself, which is why one is
given above. load_pool() returns both parts of that, the
pool and the reference word list, if you call it directly outside a
design.
Everything downstream is unchanged: the same conditions, the same
match_on, the same report, the same datasheet. What differs
is only where the candidates came from, and the datasheet records the
list’s checksum so that stays answerable later.
design_en_supplied_pool.yaml is a worked example.
Relational designs, where the item is a pair
A priming study’s theoretical variable is a property of the pair, such as distributional similarity or associative strength, while its nuisance variables are properties of each member: frequency, length, neighbourhood. A design could previously have matching, or its own item table, but not both, so a relational design had to be assembled by hand.
items.members promotes an ordinary item table to a
pair-keyed one.
items:
source: table
path: items/priming_pairs_en.csv
members: [prime, target] # the two word fields
lexicon: corpora/derived/en.csv # where each member's norms are looked up
anchor_condition: related # whose row represents the pair during selectionEach member’s word-level norms are joined from the lexicon and
prefixed, giving prime.frequency,
target.length and so on. The member name leads and the
dimension follows, for a reason specific to R:
prime.frequency is safe because df$prime still
exact-matches the bare prime column, whereas
frequency.prime would be a partial-matching hazard. Those
prefixed names are usable wherever a dimension is: in
pool_filters, in match_on, as a
continuous predictor or as a control.
pair.lev is the Levenshtein distance between the two
members and pair.overlap is
1 - pair.lev / length of the longer form, a normalised
orthographic similarity. It scores edit operations, so it is not a count
of shared material: abc and cba share every
letter but score 0.33. Orthographic overlap is the standard confound
control in a priming design, since a related pair that also shares
letters confounds semantic relatedness with orthographic similarity. The
pipeline adds both automatically when the two members are named
prime and target. Under any other member
names, call add_pair_overlap() on the item table yourself.
A predictor that cannot be computed from the forms alone, such as cosine
similarity or forward associative strength, arrives as an extra column
on the item table and is used like any other.
n_per_condition: 8 # counts PAIRS: 8 pairs, 16 rows, 8 per list
pool_filters:
target.length: [3, 7]
target.frequency: [3.0, 6.0]
continuous:
predictor: target.frequency
controls: [target.length, pair.overlap]
match_on: [target.length, pair.overlap]Two rules follow from the item being a pair. A filter applies to a
pair only if every one of its rows passes, and selection runs
over one row per pair, the anchor_condition, defaulting to
the byte-first condition, with the result re-expanded afterwards so
every condition row of every chosen pair survives. Neither is an
optimisation. A filter on prime.frequency applied row by
row would keep a pair’s related row and drop its unrelated one, leaving
a set the Latin-square counterbalancer cannot complete. Only a dimension
that varies within the pair can split it that way, which the prime-level
and pair-level ones do and the target-level ones do not, since the
target is the same word in both rows.
A member name may not be one of word, id,
set, list, trial,
condition, replicate or item,
which the engines read directly, and a design using one is refused. The
datasheet gains a relational block recording the members,
the pair count, the member lexicon and its checksum, and the
member-level dimensions separately from the relational ones.
design_en_priming_continuous.yaml is the worked example,
and its own comments go further into why each rule is there.
Conditions, the anchor and matched sets
A condition is a named region of the pool, given by
define_by, which is read exactly as
pool_filters is. The first condition listed is the anchor.
Its items are chosen by an even spread across the sorted candidate
subpool, so the anchor covers the whole of its region on the manipulated
dimension and does not cluster at one end. Every later condition is then
matched to the anchor item by item, and the set column
records the pairing.
design <- list(
name = "vignette_matching", language = "english", n_per_condition = 20,
pool_filters = pool_filters,
conditions = list(
list(name = "high", define_by = list(frequency = c(5.2, 7.0))),
list(name = "low", define_by = list(frequency = c(3.8, 4.4)))
),
match_on = list("length", "n_density", "old20")
)
stim <- match_stimuli(pool, design, schema)
head(
stim[
stim$set %in% 1:3,
c("set", "condition", "word", "frequency", "length", "old20")
],
6
) set condition word frequency length old20
1 1 high knew 5.20 4 1.75
2 2 high energy 5.23 6 2.60
3 3 high running 5.23 7 1.80
21 1 low myth 4.08 4 1.75
22 2 low arctic 4.03 6 2.40
23 3 low blowing 4.20 7 1.80
Because the anchor is spread across its own subpool, the order of the conditions is a design decision with consequences. The anchor’s distribution on the manipulated dimension is inherited from the pool, and every other condition’s distribution is whatever matching to that anchor produces.
The four matching methods
The method is set with matching.method in a design, or
left to the schema default. All four minimise a distance in standardised
space, computed by z-scoring each match_on dimension
against the whole pool, so that a letter and a Zipf unit become
comparable. They differ in what they minimise it over.
standardised_euclidean, the default, walks the anchor
items in order and gives each one its nearest unused counterpart,
greedily. Because the anchor is selected before any matching happens, it
preserves the anchor’s even spread exactly. Being anchored, it
generalises past two conditions, as mahalanobis does, while
joint and optimal score cross-condition pairs
and are refused with any number of conditions but two.
joint abandons the anchor. It scores every
cross-condition pair, then takes the best-matched pairs in ascending
order of distance until it has enough, so an item with no good
counterpart is simply never selected. This equates the controls more
tightly than per-anchor matching when the manipulation is confounded
with a control, and the price is that the manipulated dimension’s
realised distribution is no longer under your control. It requires
exactly two conditions.
mahalanobis replaces the Euclidean metric with one
weighted by the inverse of the pool’s correlation matrix, so that
dimensions sharing variance are not counted twice. It suits the case
where the matched dimensions are strongly intercorrelated, which is the
normal case for orthographic measures.
length n_density old20
length 1.00 -0.69 0.76
n_density -0.69 1.00 -0.73
old20 0.76 -0.73 1.00
Length, neighbourhood density and OLD20 are far from independent here. Under a plain Euclidean metric, matching on all three counts the shared length-neighbourhood variance three times over and lets an independent dimension drift. Mahalanobis distance discounts that overlap (Rubin, 1980; Stuart, 2010).
optimal keeps the Euclidean metric but solves the
pairing globally, minimising the summed distance over all pairings at
once (Gu & Rosenbaum, 1993; Hansen & Klopfer, 2006). Greedy
matching can spend the one good counterpart of a hard item on an easy
item that had alternatives. Optimal matching cannot. It requires exactly
two conditions and the clue package.
methods <- c("standardised_euclidean", "joint", "mahalanobis")
if (requireNamespace("clue", quietly = TRUE)) methods <- c(methods, "optimal")
summarise_method <- function(method) {
d <- design
d$matching <- list(method = method)
s <- match_stimuli(pool, d, schema)
cmp <- match_report(
s, c("frequency", "length", "n_density", "old20"), schema
)$comparisons
controls <- cmp[cmp$dimension != "frequency", ]
high <- s$frequency[s$condition == "high"]
low <- s$frequency[s$condition == "low"]
data.frame(
method = method,
worst_control_d = round(max(abs(controls$cohens_d)), 3),
freq_d = round(cmp$cohens_d[cmp$dimension == "frequency"], 2),
freq_raw_diff = round(mean(high) - mean(low), 2),
freq_sd_high = round(sd(high), 2)
)
}
do.call(rbind, lapply(methods, summarise_method)) method worst_control_d freq_d freq_raw_diff freq_sd_high
1 standardised_euclidean 0.038 5.12 1.51 0.39
2 joint 0.000 6.94 1.40 0.23
3 mahalanobis 0.052 5.07 1.49 0.39
4 optimal 0.000 6.94 1.40 0.23
The comparison rewards a careful reading, and it is a good
illustration of why a standardised difference should not be read as an
effect size on its own. The two globally pairing methods drive the
control differences to zero, because a free choice over all pairs can
find counterparts that match exactly on all three dimensions. Their
standardised frequency separation is also the larger of the four, yet
their raw separation in Zipf units is the smaller. Both facts have one
cause: those methods take whichever pairs match best, and those pairs
turn out to cluster, which shrinks the SD of the high condition and so
shrinks the pooled SD that freq_d divides by. A narrower
manipulation can raise d.
Whether that is a gain depends on the study. The anchor methods keep the high condition spread across its whole band by construction, which supports a claim about the band rather than about a cluster inside it, and it is variance you may want if the manipulation is later modelled as continuous. The globally pairing methods trade some of that spread for exact control of the nuisance dimensions. These numbers describe this pool and this design. The point is how to make the comparison, not which method wins.
The parity caveat on two methods
The R and Python engines select byte-identical stimuli under
standardised_euclidean and joint. They do not
guarantee it under mahalanobis or optimal.
Both of the latter route the distance through an operation whose last
bits are decided by the platform’s linear-algebra implementation, a
covariance-matrix inverse in one case and an assignment solver in the
other, and once two candidate distances differ in their final bits the
tie-break that would otherwise make the engines agree never fires.
mahalanobis usually still agrees exactly, and
optimal often selects an equally-optimal but different set.
Each run’s datasheet records which case applies, under
selection.cross_engine. If cross-engine reproducibility is
a requirement of your project, the two default methods are the ones that
carry the guarantee. The reproducibility vignette sets out why the
exception cannot simply be engineered away.
Tolerance windows
Matching by distance alone will always return the nearest available candidate, however far away it is. The tolerance window is the guard against that. Before the distance ranking, each later condition’s candidates are filtered to those lying within the anchor’s mean plus or minus k standard deviations on every matched dimension, with k set per dimension.
str(schema$matching$tolerance_k)List of 4
$ length : num 2
$ frequency: num 1
$ n_density: num 2
$ old20 : num 2
Smaller k is stricter. The default of 2.0 on the orthographic dimensions is permissive, admitting most of a normal distribution, and it is meant as a backstop against a wild counterpart. The distance ranking within the window is what does the work of control. A design tightens the window per dimension, and only the named dimensions are overridden.
The window belongs to the anchored path, so it is what
standardised_euclidean and mahalanobis apply.
joint and optimal score cross-condition pairs
directly and never read tolerance_k at all, which is worth
knowing before tightening a window and finding the selection
unmoved.
tight <- design
tight$matching <- list(tolerance_k = list(old20 = 0.25))
tight_stim <- match_stimuli(pool, tight, schema, verbose = TRUE)
round(match_report(tight_stim, "old20", schema)$comparisons$cohens_d, 3)[1] -0.066
There is a behaviour here that will bite you if you do not know it.
If a window leaves a condition with fewer candidates than there are
anchor items, the matcher neither fails nor returns a short set. It
relaxes that condition’s window and carries on. Tightening the window
past what the pool can supply therefore looks exactly like a window that
was never set, and under the default policy verbose = TRUE
is the only thing that tells you which happened.
too_tight <- design
too_tight$matching <- list(tolerance_k = list(old20 = 0.05))
relaxed_stim <- match_stimuli(pool, too_tight, schema, verbose = TRUE)lexsync: condition 'low' has 0 candidates within tolerance (< 20 needed); relaxing the window.
Two details of the relaxation matter. It is per condition and it is
all-or-nothing: the fallback drops that condition’s windows on
every matched dimension at once, not merely the one that proved
unsatisfiable, so an over-tightened old20 also discards the
length and n_density windows for that
condition. And it does not degrade the match as much as you might fear,
because the distance ranking still runs over the whole subpool and still
prefers near counterparts. Only when the relaxed subpool is still too
small does the matcher stop, with an error naming the condition and the
counts.
Both behaviours are policies, and the schema’s matching
block names them. on_insufficient_tolerance governs the
fallback just described. Its default of relax keeps the
behaviour above, while error makes the matcher refuse and
say so, which is the honest setting when the window is itself the
criterion, as it is when reproducing a published study’s stated windows.
shortfall governs what happens when fewer sets than
n_per_condition can be selected at all, and it defaults to
error deliberately: the datasheet and the generated methods
paragraph state the requested n, so a set that silently shrank would
leave the record misstating the materials. A design that can live with
fewer sets says so with shortfall: allow, and either key
may be overridden under the design’s own matching: block,
exactly as tolerance_k was overridden above.
Windows are the place to reproduce a published study’s stated
criteria. The bundled design_es_gender_repro.yaml sets
frequency to 0.111..., which is the mean plus
or minus SD/9 used by González Alonso et al. (2025), alongside
length at the mean plus or minus 2 SD.
One asymmetry is worth knowing. Tolerance windows are derived from
the anchor, so they apply to the anchor-based methods,
standardised_euclidean and mahalanobis, and to
continuous designs. joint and optimal never
build an anchor and never consult tolerance_k. Both instead
cap each subpool to the 1200 candidates nearest the other condition’s
centroid before pairing, which bounds the cost of scoring every
pair.
Continuous designs
A matched dichotomy is not the only way to study a graded property, and for a property like frequency it is often not the best one. Splitting a continuum into a high and a low band discards the variation within each band, spends statistical power to do it, and leaves the estimate dependent on where the split was placed. The selection can also manufacture its own artefacts: Liben-Nowell et al. (2019) show that choosing a controlled subset from a large candidate set can produce an apparent effect from a set where none exists, because the selection is itself a search over the space of possible item sets. Kuperman (2015) makes the constructive case, that a megastudy’s variation can be used directly by sampling across a predictor’s range and modelling it.
A continuous block does that. Rather than conditions, it
names one predictor to span and the controls to hold still, and the two
must agree with match_on.
cont_design <- list(
name = "vignette_continuous", language = "english", n_per_condition = 60,
pool_filters = pool_filters,
continuous = list(
predictor = "frequency",
controls = c("length", "n_density", "old20")
),
match_on = list("length", "n_density", "old20"),
matching = list(
tolerance_k = list(length = 1.5, n_density = 1.5, old20 = 1.5)
)
)
cont <- select_continuous_stimuli(pool, cont_design, schema)
nrow(cont)[1] 60
range(cont$frequency)[1] 3.80 6.85
Selection runs in two passes. An even spread over the pool defines the control windows from its own distribution, the pool is filtered to those windows, and a second even spread over what survives is the selection. The result covers the predictor’s range while the controls stay near-constant, and therefore near-uncorrelated with the predictor, which is what the regression needs.
cont_report <- match_report_continuous(
cont, "frequency",
c("length", "n_density", "old20"), schema
)
cont_report$comparisons dimension role pearson_r predictor_span
1 frequency predictor NA 3.05
2 length control -0.191 3.05
3 n_density control 0.112 3.05
4 old20 control -0.228 3.05
The report is read differently from a matched one.
predictor_span is the realised range of the predictor in
the selected set and should be wide, since it is the variation the
regression has to work with. Each control’s pearson_r is
its correlation with the predictor and should be near zero, since a
control that still correlates with the predictor is still a confound.
Tightening tolerance_k pushes those correlations down at
the cost of a smaller eligible pool, and that is the dial to turn when a
control will not come loose.
The datasheet for a continuous design reports the span, the correlations and a suggested regression model in which the controls enter as covariates.
Reading the validation output
match_report() returns two data frames. The descriptives
give per-condition n, mean, SD, minimum, median and maximum for each
dimension, which is the table that belongs in a paper’s materials
section.
report <- match_report(
stim, c("frequency", "length", "n_density", "old20"), schema
)
knitr::kable(
report$descriptives,
caption = "Descriptive statistics per condition"
)| group | dimension | n | mean | sd | min | median | max |
|---|---|---|---|---|---|---|---|
| high | frequency | 20 | 5.573 | 0.387 | 5.20 | 5.480 | 6.85 |
| high | length | 20 | 5.400 | 0.995 | 4.00 | 5.000 | 7.00 |
| high | n_density | 20 | 2.950 | 2.911 | 0.00 | 2.500 | 12.00 |
| high | old20 | 20 | 1.780 | 0.318 | 1.15 | 1.750 | 2.60 |
| low | frequency | 20 | 4.059 | 0.159 | 3.85 | 4.035 | 4.32 |
| low | length | 20 | 5.400 | 0.995 | 4.00 | 5.000 | 7.00 |
| low | n_density | 20 | 2.850 | 2.323 | 0.00 | 2.500 | 8.00 |
| low | old20 | 20 | 1.773 | 0.272 | 1.20 | 1.750 | 2.40 |
The comparisons contrast every other condition against the anchor on every dimension, and they carry the four statistics that answer whether the matching worked.
knitr::kable(
report$comparisons,
caption = paste(
"Realised control: standardised differences with 90% intervals,",
"variance ratios and TOST verdicts"
)
)| condition | reference | dimension | cohens_d | d_ci_low | d_ci_high | var_ratio | tost_p | equivalent |
|---|---|---|---|---|---|---|---|---|
| low | high | frequency | 5.119 | 4.586 | 5.653 | 0.168 | 1.0000 | FALSE |
| low | high | length | 0.000 | -0.533 | 0.533 | 1.000 | 0.0611 | FALSE |
| low | high | n_density | 0.038 | -0.495 | 0.571 | 0.637 | 0.0761 | FALSE |
| low | high | old20 | 0.025 | -0.508 | 0.559 | 0.734 | 0.0708 | FALSE |
cohens_d is the standardised mean difference against the
anchor, using the pooled SD. On the manipulated dimension it should be
large and on a controlled dimension it should be near zero.
d_ci_low and d_ci_high bound it with a 90%
confidence interval. The interval, not the point estimate, is the
primary summary of a controlled dimension. Its upper limit is the
largest imbalance still consistent with the stimuli you have, and with
few items that limit can be substantial even when the point estimate is
almost zero. Reporting the interval keeps the dependence on set size
visible, where a bare ‘no significant difference’ hides it. The width is
a property of the number of items, so a small set cannot demonstrate
tight control however good its point estimates look (Sassenhagen &
Alday, 2016).
var_ratio is the condition’s variance over the anchor’s.
Two conditions can share a mean and still confound if one is far more
spread out than the other, which every mean-based statistic misses, so
this is the distributional check. A ratio near 1 is balanced and a
common heuristic flags ratios outside roughly 0.5 to 2. See
?variance_ratio for the sources behind that heuristic.
tost_p and equivalent are the two one-sided
tests. A conventional non-significant difference test is not evidence of
equivalence, because failing to reject a null is not the same as
supporting it, and the failure is easiest to achieve with few items and
noisy measures. TOST inverts this by testing against an explicit bound:
the reported p is the larger of two one-sided p-values against a
difference of plus or minus bound_d pooled SDs, and a value
below alpha supports equivalence within that bound (Lakens, 2017). The
bound and alpha are the schema’s, so the verdict is only as meaningful
as the bound you chose.
str(schema$equivalence)List of 2
$ bound_d: num 0.5
$ alpha : num 0.05
A bound of 0.5 SD is the schema default and it is a convention rather than a finding. It is a permissive bound for a nuisance dimension in a design where that dimension has a strong effect on the response, and a study that cares about a particular confound should set a bound it can defend. The 90% interval is the 1 - 2 x alpha interval precisely so that it corresponds to the TOST decision at alpha: the test declares equivalence exactly when the interval falls entirely inside the bounds, which means the interval and the verdict are two readings of one thing.
The individual statistics are exported and can be called directly on any two vectors.
high <- stim$old20[stim$condition == "high"]
low <- stim$old20[stim$condition == "low"]
str(cohens_d_ci(high, low))List of 3
$ d : num 0.0254
$ ci_low : num -0.508
$ ci_high: num 0.559
str(tost_equiv(high, low, bound_d = 0.5))List of 2
$ p : num 0.0708
$ equivalent: logi FALSE
round(variance_ratio(low, high), 3)[1] 0.734
balance_check() is the last piece and answers a
different question: whether the levels of a column occur equally often.
It returns human-readable warnings and an empty vector when all is well,
and the pipeline logs whatever it returns.
balance_check(stim, "condition")character(0)
balance_check(rbind(stim, stim[1, ]), "condition")[1] "Column 'condition' is unbalanced: high=21, low=20"
Pseudowords
Lexical decision needs non-words, and the difficulty is that they
must be orthographically plausible without being real.
build_lexdec_stimuli() draws real words by an even spread
across the byte-ordered pool, then generates a length-matched pseudoword
for each.
lexdec_pool <- build_pool(lex, list(length = c(4, 7), frequency = c(3.5, 6.0)))
stim_lexdec <- build_lexdec_stimuli(
lexdec_pool, n = 8, reference_words = lex$word
)
head(stim_lexdec[, c("target", "condition", "length", "set")], 4) target condition length set
1 aaron word 5 1
2 carrier word 7 2
3 erected word 7 3
4 house word 5 4
The presented string is target, the conditions are
word and pseudoword, and set
pairs each word with its non-word twin. reference_words
should be the full lexicon: it supplies the bigram statistics and the
list of real forms a pseudoword must avoid, and it defaults to the pool
when omitted, which is rarely what you want.
Two methods are available, chosen per design under
items.generation.method.
letter_substitution, the default, changes as few letters
as possible subject to three constraints: every resulting bigram must be
attested in the corpus, the form must not be a real word or one already
generated, and the length must be preserved exactly. Single
substitutions are searched first, then pairs as a fallback. Among the
legal candidates the most bigram-plausible wins, with a byte-order
tie-break.
subsyllabic splits each word into onset, nucleus and
coda constituents and swaps whole constituents for attested alternatives
of the same role and length, so the pseudowords keep their syllabic
structure. Codas and nuclei are changed before onsets, which carry the
most identifying orthography. Roughly two thirds of a word’s
constituents are targeted, each swap preserves length, and a word with
no legal swap falls back to letter substitution, so every word yields a
pseudoword. It is a deterministic orthographic approximation of Wuggy
(Keuleers & Brysbaert, 2010), trading Wuggy’s phonological model for
exact length matching and cross-engine reproducibility.
sub_stim <- build_lexdec_stimuli(
lexdec_pool, n = 8, reference_words = lex$word, method = "subsyllabic"
)
# The real words come first in the frame, so pair each with its twin by `set`.
merge(
sub_stim[sub_stim$condition == "word", c("set", "target")],
sub_stim[sub_stim$condition == "pseudoword", c("set", "target")],
by = "set", suffixes = c("_word", "_pseudoword")
)[1:4, ] set target_word target_pseudoword
1 1 aaron ierer
2 2 carrier cinrees
3 3 erected aristar
4 4 house reesi
Both generators process base words in byte order, so the set of
already-used pseudowords evolves identically in the two engines and both
select byte-identical stimuli. Both are also orthographic models defined
for a-z words: build_lexdec_stimuli() filters the pool to
those, and the subsyllabic segmenter returns nothing for a word with an
accent, a hyphen or a digit, which sends it down the letter-substitution
path. That is why lexical decision is demonstrated on the English
designs and never on the Chinese one.
generate_pseudowords() and
make_pseudoword() are available directly if you want the
forms without the lexical-decision scaffolding around them.
generate_pseudowords(c("house", "table"), lex$word) base_word pseudoword
1 house hoese
2 table talle
In a design this is items.source: generate, with the
method under items.generation.method.
design_en_lexdec.yaml and
design_en_lexdec_wuggy.yaml are the worked examples of the
two methods, and design_en_lexdec_blocks.yaml adds practice
and filler blocks to the same generated set.
Items as a random factor
A matched set is one sample from the language, and an analysis that
treats its items as fixed generalises to those items rather than to the
language they were drawn from (Clark, 1973; Yarkoni, 2022). Crossed
random effects are the standard answer, and the datasheet suggests a
model that includes them. resample_stimuli() supports the
stronger move of drawing several fully matched sets that share no items,
each one an independent sample, which lets a study run different item
samples across participant groups or show that an effect survives the
change of materials.
reps <- resample_stimuli(pool, design, schema, n_sets = 2)
table(reps$replicate, reps$condition)
high low
1 20 20
2 20 20
[1] 0
Each replicate is matched independently against the pool with the earlier replicates’ items removed, so the sets are disjoint by construction. Later replicates draw from a depleted pool, which means match quality can degrade across replicates. The report will show it if it does.
References
Clark, H. H. (1973). The language-as-fixed-effect fallacy: A critique of language statistics in psychological research. Journal of Verbal Learning and Verbal Behavior, 12(4), 335–359. https://doi.org/10.1016/S0022-5371(73)80014-3
Coltheart, M., Davelaar, E., Jonasson, J. T., & Besner, D. (1977). Access to the internal lexicon. In S. Dornic (Ed.), Attention and Performance VI (pp. 535–555). Erlbaum.
González Alonso, J., Bernabeu, P., Silva, G., DeLuca, V., Poch, C., Ivanova, I., & Rothman, J. (2025). Starting from the very beginning: Unraveling third language (L3) development with longitudinal data from artificial language learning and EEG. International Journal of Multilingualism, 22(1), 119–142. https://doi.org/10.1080/14790718.2024.2415993
Gu, X. S., & Rosenbaum, P. R. (1993). Comparison of multivariate matching methods: Structures, distances, and algorithms. Journal of Computational and Graphical Statistics, 2(4), 405–420. https://doi.org/10.1080/10618600.1993.10474623
Hansen, B. B., & Klopfer, S. O. (2006). Optimal full matching and related designs via network flows. Journal of Computational and Graphical Statistics, 15(3), 609–627. https://doi.org/10.1198/106186006X137047
Keuleers, E., & Brysbaert, M. (2010). Wuggy: A multilingual pseudoword generator. Behavior Research Methods, 42(3), 627–633. https://doi.org/10.3758/BRM.42.3.627
Kuperman, V. (2015). Virtual experiments in megastudies: A case study of language and emotion. Quarterly Journal of Experimental Psychology, 68(8), 1693–1710. https://doi.org/10.1080/17470218.2014.989865
Lakens, D. (2017). Equivalence tests: A practical primer for t tests, correlations, and meta-analyses. Social Psychological and Personality Science, 8(4), 355–362. https://doi.org/10.1177/1948550617697177
Liben-Nowell, D., Strand, J., Sharp, A., Wexler, T., & Woods, K. (2019). The danger of testing by selecting controlled subsets, with applications to spoken-word recognition. Journal of Cognition, 2(1), Article 2. https://doi.org/10.5334/joc.51
Rubin, D. B. (1980). Bias reduction using Mahalanobis-metric matching. Biometrics, 36(2), 293–298. https://doi.org/10.2307/2529981
Sassenhagen, J., & Alday, P. M. (2016). A common misapplication of statistical inference: Nuisance control with null-hypothesis significance tests. Brain and Language, 162, 42–45. https://doi.org/10.1016/j.bandl.2016.08.001
Stuart, E. A. (2010). Matching methods for causal inference: A review and a look forward. Statistical Science, 25(1), 1–21. https://doi.org/10.1214/09-STS313
van Heuven, W. J. B., Mandera, P., Keuleers, E., & Brysbaert, M. (2014). SUBTLEX-UK: A new and improved word frequency database for British English. Quarterly Journal of Experimental Psychology, 67(6), 1176–1190. https://doi.org/10.1080/17470218.2013.850521
Yarkoni, T. (2022). The generalizability crisis. Behavioral and Brain Sciences, 45, Article e1. https://doi.org/10.1017/S0140525X20001685
Yarkoni, T., Balota, D., & Yap, M. (2008). Moving beyond Coltheart’s N: A new measure of orthographic similarity. Psychonomic Bulletin & Review, 15(5), 971–979. https://doi.org/10.3758/PBR.15.5.971